Publications

In-Press Publications

BabelFSH—A Toolkit for an Effective HL7 FHIR-based Terminology Provision (2025): Wiedekopf, J., Ohlsen, T., Kock-Schoppenhauer, A. & Ingenerf, J. (2025). BabelFSH—A Toolkit for an Effective HL7 FHIR-based Terminology Provision. DOI: 10.21203/rs.3.rs-6992162/v1

2025

Extracting LOINC Codes from a Laboratory Information System’s Index: Addressing Semantic Interoperability with Web Scraping (2025): Kinast, B., Wiedekopf, J., Ulrich, H. & Schreiweis, B. (2025). Extracting LOINC Codes from a Laboratory Information System’s Index: Addressing Semantic Interoperability with Web Scraping. In: Baumgartner, M., Hayn, D., Pfeifer, B. & Schreier, G. (Eds.), Studies in Health Technology and Informatics. IOS Press. DOI: 10.3233/SHTI250194
Generating a FHIR ConceptMap from WHO’s ICD-10 to ICD-11 Mapping Tables (2025): Ohlsen, T., Ingenerf, J. & Wiedekopf, J. (2025). Generating a FHIR ConceptMap from WHO’s ICD-10 to ICD-11 Mapping Tables. In: Andrikopoulou, E., Gallos, P., Arvanitis, T., Austin, R., Benis, A., Cornet, R., Chatzistergos, P., Dejaco, A., Dusseljee-Peute, L., Mohasseb, A., Natsiavas, P., Nakkas, H. & Scott, P. (Eds.), Studies in Health Technology and Informatics. IOS Press. DOI: 10.3233/SHTI250614
The Terminology Server Challenge 2023 (2025): Wiedekopf, J., Ohlsen, T., Schladetzky, J., Sass, J. & Ingenerf, J. (2025). The Terminology Server Challenge 2023. In: Andrikopoulou, E., Gallos, P., Arvanitis, T., Austin, R., Benis, A., Cornet, R., Chatzistergos, P., Dejaco, A., Dusseljee-Peute, L., Mohasseb, A., Natsiavas, P., Nakkas, H. & Scott, P. (Eds.), Studies in Health Technology and Informatics. IOS Press. DOI: 10.3233/SHTI250271

2024

A Generic Transformation Approach for Complex Laboratory Data Using the Fast Healthcare Interoperability Resources Mapping Language: Method Development and Implementation (2024): Kruse, J., Wiedekopf, J., Kock-Schoppenhauer, A., Essenwanger, A., Ingenerf, J. & Ulrich, H. (2024). A Generic Transformation Approach for Complex Laboratory Data Using the Fast Healthcare Interoperability Resources Mapping Language: Method Development and Implementation. JMIR Medical Informatics, 12. e57569–e57569. DOI: 10.2196/57569
Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative (2024): Ammon, D., Kurscheidt, M., Buckow, K., Kirsten, T., Löbe, M., Meineke, F., Prasser, F., Saß, J., Sax, U., Stäubert, S., Thun, S., Wettstein, R., Wiedekopf, J., Wodke, J., Boeker, M. & Ganslandt, T. (2024). Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz, 67(6). 656–667. DOI: 10.1007/s00103-024-03888-4
FML2Mirth: Generic Transformation of complex laboratory data based on FML mapping rules and automatically generated Mirth channels (Preprint) (2024): Kruse, J., Wiedekopf, J., Kock-Schoppenhauer, A., Essenwanger, A., Ingenerf, J. & Ulrich, H. (2024). FML2Mirth: Generic Transformation of complex laboratory data based on FML mapping rules and automatically generated Mirth channels (Preprint). JMIR Medical Informatics. DOI: 10.2196/57569
Integration von Wearables und Nutzung von digitalen Biomarkern zur Diagnostik und Therapie im Gesundheitswesen (2024): Ciortuz, G., Wiedekopf, J. & Fudickar, S. (2024). Integration von Wearables und Nutzung von digitalen Biomarkern zur Diagnostik und Therapie im Gesundheitswesen. In: Henke, V., Hülsken, G., Schneider, H. & Varghese, J. (Eds.), Health Data Management (pp. 323–336). Springer Fachmedien Wiesbaden. DOI: 10.1007/978-3-658-43236-2_31
Reformatted Crosswalk-Tables Between Annual ICD-10-Versions for Cross Version Data Analysis (2024): Ohlsen, T., Wiedekopf, J. & Ingenerf, J. (2024). Reformatted Crosswalk-Tables Between Annual ICD-10-Versions for Cross Version Data Analysis. In: Mantas, J., Hasman, A., Demiris, G., Saranto, K., Marschollek, M., Arvanitis, T., Ognjanović, I., Benis, A., Gallos, P., Zoulias, E. & Andrikopoulou, E. (Eds.), Studies in Health Technology and Informatics. IOS Press. DOI: 10.3233/SHTI240652
The FHIR Terminology Module and its Implications for the Use of Coded Data in Modern Data Integration (2024): Wiedekopf, J. & Ingenerf, J. (2024). The FHIR Terminology Module and its Implications for the Use of Coded Data in Modern Data Integration. Gesundheit – gemeinsam. Kooperationstagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Deutschen Gesellschaft für Sozialmedizin und Prävention (DGSMP), Deutschen Gesellschaft für Epidemiologie (DGEpi), Deutschen Gesellschaft für Medizinische Soziologie (DGMS) und der Deutschen Gesellschaft für Public Health (DGPH). DOI: 10.3205/24GMDS008
Trust and Uniformity through FHIR Validation: A Proposal for Establishing Guarantees in Cross-Institutional Healthcare Data Exchange (2024): Kurscheidt, M., Wiedekopf, J., Gruendner, J., Triefenbach, L., Schweizer, S., Saß, J., Wettstein, R., Hund, H., Uliczka, B., Fegeler, C. & Rosenau, L. (2024). Trust and Uniformity through FHIR Validation: A Proposal for Establishing Guarantees in Cross-Institutional Healthcare Data Exchange. Gesundheit – gemeinsam. Kooperationstagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Deutschen Gesellschaft für Sozialmedizin und Prävention (DGSMP), Deutschen Gesellschaft für Epidemiologie (DGEpi), Deutschen Gesellschaft für Medizinische Soziologie (DGMS) und der Deutschen Gesellschaft für Public Health (DGPH). DOI: 10.3205/24GMDS011
Uncovering Harmonization Potential in Health Care Data Through Iterative Refinement of Fast Healthcare Interoperability Resources Profiles Based on Retrospective Discrepancy Analysis: Case Study (2024): Rosenau, L., Behrend, P., Wiedekopf, J., Gruendner, J. & Ingenerf, J. (2024). Uncovering Harmonization Potential in Health Care Data Through Iterative Refinement of Fast Healthcare Interoperability Resources Profiles Based on Retrospective Discrepancy Analysis: Case Study. JMIR Medical Informatics, 12. e57005. DOI: 10.2196/57005

2023

Die neue zentrale Service Unit Terminological Services (SU-TermServ) der MII (2023): Ingenerf, J., Wiedekopf, J., Beyer, A., Adnan, M., Marschollek, M. & Haarbrandt, B. (2023). Die neue zentrale Service Unit Terminological Services (SU-TermServ) der MII. MIRACUM DIFUTURE Journal. Retrieved from: https://www.miracum.org/files/2023/04/MIRACUM_Journal_N6.pdf
Mettertron - Bridging Metadata Repositories and Terminology Servers (2023): Schladetzky, J., Kock-Schoppenhauer, A., Drenkhahn, C., Ingenerf, J. & Wiedekopf, J. (2023). Mettertron - Bridging Metadata Repositories and Terminology Servers. Studies in Health Technology and Informatics, 307. 243–248. DOI: 10.3233/SHTI230721
MIMIC-IV on FHIR: converting a decade of in-patient data into an exchangeable, interoperable format (2023): Bennett, A., Ulrich, H., Van Damme, P., Wiedekopf, J. & Johnson, A. (2023). MIMIC-IV on FHIR: converting a decade of in-patient data into an exchangeable, interoperable format. Journal of the American Medical Informatics Association, 30(4). 718–725. DOI: 10.1093/jamia/ocad002
Performance Benchmarking of FHIR Terminology Operations in ETL Jobs (2023): Wiedekopf, J., Drenkhahn, C. & Ingenerf, J. (2023). Performance Benchmarking of FHIR Terminology Operations in ETL Jobs. Studies in Health Technology and Informatics, 302. 707–710. DOI: 10.3233/SHTI230244
WASP—A Web Application to Support Syntactically and Semantically Correct SNOMED CT Postcoordination (2023): Drenkhahn, C., Ohlsen, T., Wiedekopf, J. & Ingenerf, J. (2023). WASP—A Web Application to Support Syntactically and Semantically Correct SNOMED CT Postcoordination. Applied Sciences, 13(10). 6114. DOI: 10.3390/app13106114

2022

TermiCron - Bridging the Gap Between FHIR Terminology Servers and Metadata Repositories (2022): Wiedekopf, J., Ulrich, H., Drenkhahn, C., Kock-Schoppenhauer, A. & Ingenerf, J. (2022). TermiCron - Bridging the Gap Between FHIR Terminology Servers and Metadata Repositories. Studies in Health Technology and Informatics, 290. 71–75. DOI: 10.3233/SHTI220034
TerminoDiff - Detecting Semantic Differences in HL7 FHIR CodeSystems (2022): Wiedekopf, J., Drenkhahn, C., Rosenau, L., Ulrich, H., Kock-Schoppenhauer, A. & Ingenerf, J. (2022). TerminoDiff - Detecting Semantic Differences in HL7 FHIR CodeSystems. Studies in Health Technology and Informatics, 294. 362–366. DOI: 10.3233/SHTI220475

2021

Desiderata for a Synthetic Clinical Data Generator (2021): Wiedekopf, J., Ulrich, H., Essenwanger, A., Kiel, A., Kock-Schoppenhauer, A. & Ingenerf, J. (2021). Desiderata for a Synthetic Clinical Data Generator. Studies in Health Technology and Informatics, 281. 68–72. DOI: 10.3233/SHTI210122
Hands on the Medical Informatics Initiative Core Data Set — Lessons Learned from Converting the MIMIC-IV (2021): Ulrich, H., Behrend, P., Wiedekopf, J., Drenkhahn, C., Kock-Schoppenhauer, A. & Ingenerf, J. (2021). Hands on the Medical Informatics Initiative Core Data Set — Lessons Learned from Converting the MIMIC-IV. In: Röhrig, R., Beißbarth, T., König, J., Ose, C., Rauch, G., Sax, U., Schreiweis, B. & Sedlmayr, M. (Eds.), Studies in Health Technology and Informatics. IOS Press. DOI: 10.3233/SHTI210549
Medical Data Engineering – Theory and Practice (2021): Kock-Schoppenhauer, A., Schreiweis, B., Ulrich, H., Reimer, N., Wiedekopf, J., Kinast, B., Busch, H., Bergh, B. & Ingenerf, J. (2021). Medical Data Engineering – Theory and Practice. In: Bellatreche, L., Chernishev, G., Corral, A., Ouchani, S. & Vain, J. (Eds.), Advances in Model and Data Engineering in the Digitalization Era (pp. 269–284). Springer International Publishing. DOI: 10.1007/978-3-030-87657-9_21
Providing ART-DECOR ValueSets via FHIR Terminology Servers - A Technical Report (2021): Wiedekopf, J., Drenkhahn, C., Ulrich, H., Kock-Schoppenhauer, A. & Ingenerf, J. (2021). Providing ART-DECOR ValueSets via FHIR Terminology Servers - A Technical Report. Studies in Health Technology and Informatics, 283. 127–135. DOI: 10.3233/SHTI210550